2007-2000

See also Google Scholar for links to articles and citations.

2007

  1. Balducci, A., Hsieh, C.-C., and Doyle, P.S., “Relaxation of stretched DNA in slit-like confinement”, Phys. Rev. Lett., 99, 238102, 2007. pdf reprint
  1. Mohan, A. and Doyle, P.S., “Effect of disorder on DNA electrophoresis in a microfluidic array of obstacles”, Phys. Rev. E,76(4), 040903, 2007. pdf reprint
  1. Kim, J.M. and Doyle, P.S., “Brownian dynamics simulation of a DNA molecule colliding with a small cylindrical post”,Macromolecules, 40, 9151-9163, 2007. pdf reprint
  1. Mohan, A. and Doyle, P.S., “Stochastic modeling and simulation of DNA electrophoretic separation in a microfluidic obstacle array”, Macromolecules, 40, 8794-8806, 2007. pdf reprint
  1. Jang, J., Dendukuri, D., Hatton, T.A., Thomas, E.L., and Doyle, P.S., “A route to three-dimensional structures in a microfluidic device: Stop flow interference lithography”, Angew. Chem. Int. Ed., 46, 9027-9031, 2007. pdf reprint
    Also featured in Technology Review and MIT Tech Talk.
  1. Underhill, P.T. and Doyle, P.S., “DNA stretch during electrophoresis due to a step change in mobility”, Phys. Rev. E, 76, 011805, 2007. pdf reprint
  1. Savin, T. and Doyle, P.S. “Electrostatically-tuned rate of peptide self-assembly resolved by multiple particle tracking”, Soft Matter, 3, 1194-1202, 2007. pdf reprint
  1. Underhill, P.T. and Doyle, P.S., “Accuracy of Bead-Spring Chains in Strong Flow”, J. Non-Newt. Fluid Mech., 145, 109-123, 2007. pdf reprint
  1. Tang, J. and Doyle, P.S., “Electrophoretic stretching of DNA molecules using microscale T-junctions”, Appl. Phys. Lett., 90, 224103, 2007. pdf reprint
  1. Hsieh, C.C., Balducci, A., and Doyle, P.S., “An experimental study of DNA rotational relaxation time in nanoslits”,Macromolecules, 40, 5196-5205, 2007. pdf reprint
  1. Mohan, A. and Doyle, P.S. “Unraveling of a tethered polymer chain in uniform solvent flow”, Macromolecules, 40, 4301-4312, 2007. pdf reprint
  1. Dendukuri, D., Gu, S.S., Pregibon, D.C., Hatton, T.A., and Doyle, P.S., “Stop flow lithography in a microfluidic device”, Lab Chip, 7, 818-828, 2007. pdf reprint
    Also featured in Chemical Technology.
  1. Savin, T. and Doyle, P.S. “Statistical and sampling issues when using multiple particle tracking”, Phys. Rev. E, 76, 021501, 2007. pdf reprint
  1. Haghgooie, R. and Doyle, P.S. “Transition from 2D to 3D behavior in the self-assembly of magnetorheological fluids confined in thin-slits”, Phys. Rev. E, 75, 061406, 2007. pdf reprint
  1. Dendukuri, D., Hatton, T.A., and Doyle, P.S. “Synthesis and self-assembly of amphiphilic polymeric microparticles”,Langmuir, 23, 4669-4674, 2007. pdf reprint
  1. Pregibon, D.C., Toner M., and Doyle, P.S. “Multifunctional encoded particles for high-throughput biomolecule analysis”,Science, 315, 1393-1396, 2007. pdf reprint
    Also featured in Nature Chemical Biology, Nature Methods, Technology Review, and the MIT Homepage.
  1. Haghgooie, R. and Doyle, P.S. “MR fluid structure in quasi-2D”, Euro. Phys. Lett., 77, 18002, 2007. pdf reprint
  1. Kim, J.M. and Doyle, P.S. “Design and numerical simulation of a DNA electrophoretic stretching device”, Lab Chip, 7(2), 213-225, 2007. pdf reprint

2006

  1. Randall, G.C. and Doyle, P.S. “Collision of a DNA polymer with a small obstacle”, Macromolecules, 39(22), 7734-7745, 2006.pdf reprint
  1. Balducci, A., Mao, P., Han, J. and Doyle, P.S. “Double-Stranded DNA Diffusion in Slit-like Nanochannels”, Macromolecules,39(18), 6273-6281, 2006. pdf reprint
  1. Kim, J.M. and Doyle, P.S. “A Brownian dynamics-finite element method for simulating DNA electrophoresis in non-homogeneous electric fields”, J. Chem. Phys., 125(7), 074906, 2006. pdf reprint
  1. Underhill, P.T. and Doyle, P.S. “Alternative spring force law for bead-spring chain models of the worm-like chain”, J. Rheol.,50(4), 513-529, 2006. pdf reprint
  1. Pregibon, D.C., Toner, M., and Doyle, P.S. “Magnetically and Biologically Active Bead-Patterned Hydrogels”, Langmuir, 22, 5122-5128, 2006.pdf reprint
  1. Dendukuri, D., Pregibon, D.C., Collins, J., Hatton, T.A. and Doyle, P.S. “Continuous Flow Lithography for High-Throughput Microparticle Synthesis”, Nat. Mater., 5, 365-369, May 2006.pdf reprint Also featured in Technology Review, Nature,Analytical Chemistry, and Lab on a Chip.
  1. Randall, G.C., Schultz K.M., and Doyle, P.S. “Methods to Electrophoretically Stretch DNA: Microcontractions, Gels, and Hybrid Gel-Microcontraction Devices”, Lab Chip, 6(4), 516-525, 2006.pdf reprint
  1. Haghgooie, R., Li, C., and Doyle, P.S. “Experimental study of structure and dynamics in a monolayer of paramagnetic colloids confined by parallel hard walls”, Langmuir, 22, 3601-3605, 2006. pdf reprint

2005

  1. Underhill, P.T. and Doyle, P.S. “Development of bead-spring polymer models using the constant extension ensemble”, J. Rheol. , 49(5), 963-987, 2005.pdf reprint
  1. Randall, G.C. and Doyle, P.S. “Permeation driven flow in poly(dimethylsiloxane) microfluidic devices”, PNAS , 102(31), 10813-10818, 2005.pdf reprint
  1. Haghgooie, R. and Doyle, P.S. “Structure and dynamics of repulsive magnetorheological colloids in two-dimensional channels”, Phys. Rev. E, 72(1), 011405, 2005.pdf reprint
  1. Dendukuri, D., Tsoi, K., Hatton, T.A., and Doyle, P.S. “Controlled Synthesis of Non-Spherical Microparticles Using Microfluidics”, Langmuir, 21, 2113-2116, 2005.pdf reprint
  1. Savin, T. and Doyle, P.S. “Role of a finite exposure time on measuring an elastic modulus using microrheology”, Phys. Rev. E, 71, 041106, 2005.pdf reprint
  1. Randall, G.C. and Doyle, P.S. “DNA Deformation in Electric Fields: DNA Driven Past a Cylindrical Obstruction”,Macromolecules, 38, 2410-2418, 2005.pdf reprint
  1. Savin, T. and Doyle, P.S. “Static and dynamic errors in particle tracking microrheology”, Biophys. J., 88, 623-638, 2005.pdf reprint

2004

  1. Chen, Y.-L, Graham, M.D., de Pablo, J.J., Randall, G.C., Gupta, M. and Doyle, P.S. “Conformation and Dynamics of Single DNA in Parallel-Plate Slit Microchannels”, Phys. Rev. E, 70, 060901 (R) 2004.pdf reprint
  1. Haghgooie, R. and Doyle, P.S. “Structural analysis of a dipole system in two-dimensional channels”, Phys. Rev. E, 70, 061408, 2004.pdf reprint
  1. Doyle, P.S. and Underhill, P.T. “Brownian dynamics simulations of polymers and soft matter”, In S. Yip, (ed.), Handbook of Materials Modeling, 2005, Springer, 2619-2630 pdf preprint
  1. Underhill, P.T. and Doyle, P.S. “On the Coarse-graining of Polymers into Bead-Spring Chains”, J. Non-Newt. Fluid Mech.,122(1),3-31, 2004 pdf reprint
  1. Randall, G.C. and Doyle, P.S. “Electrophoretic collision of a DNA molecule with an insulating post”, Phys. Rev. Lett., 93(5), 058102, 2004. pdf reprint

2003

  1. Wagner, C., Amarouchene, Y., Doyle P.S., Bonn, D., “Turbulent-drag reduction of polyelectrolyte solutions: Relation with the elongational viscosity”, Europhys. Lett., 64(6), 823-829, 2003. pdf reprint

2002

  1. Doyle, P.S., Bibette, J., Bancaud, A., Viovy, J.L., “Self-Assembled Magnetic Matrices for DNA Separation in Lab on a Chip”,Science , 295, 2237, 2002. pdf reprint

2001

  1. Ladoux, B., Quivy, J.P., Doyle, P.S., Almouzni, G., Viovy, J.L., “Direct imaging of single-molecules: from dynamics of single DNA chain to the study of complex DNA-protein intereactions”, Science Progress , 84, 267-290, 2001. pdf reprint